Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
a090a883
Commit
a090a883
authored
Jan 05, 2017
by
Peter van 't Hof
Browse files
Fixing fix-BIOPET-506
parent
c779f1f0
Changes
1
Hide whitespace changes
Inline
Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
a090a883
...
...
@@ -80,8 +80,6 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
if
(
inputR1
==
null
)
Logging
.
addError
(
"Missing input R1 on flexiprep module"
)
else
{
paired
=
inputR2
.
isDefined
inputFiles
:+=
new
InputFile
(
inputR1
)
inputR2
.
foreach
(
inputFiles
:+=
new
InputFile
(
_
))
...
...
@@ -89,6 +87,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
inputR2
.
foreach
{
fileR2
=>
paired
=
true
R2Name
=
getUncompressedFileName
(
fileR2
)
if
(
fileR2
==
inputR1
)
Logging
.
addError
(
s
"R1 and R2 for $sampleId -> $libId are the same"
)
}
}
}
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment