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biopet.biopet
Commits
a090a883
Commit
a090a883
authored
Jan 05, 2017
by
Peter van 't Hof
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Fixing fix-BIOPET-506
parent
c779f1f0
Changes
1
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-2
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
+1
-2
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flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
a090a883
...
...
@@ -80,8 +80,6 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
if
(
inputR1
==
null
)
Logging
.
addError
(
"Missing input R1 on flexiprep module"
)
else
{
paired
=
inputR2
.
isDefined
inputFiles
:+=
new
InputFile
(
inputR1
)
inputR2
.
foreach
(
inputFiles
:+=
new
InputFile
(
_
))
...
...
@@ -89,6 +87,7 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
inputR2
.
foreach
{
fileR2
=>
paired
=
true
R2Name
=
getUncompressedFileName
(
fileR2
)
if
(
fileR2
==
inputR1
)
Logging
.
addError
(
s
"R1 and R2 for $sampleId -> $libId are the same"
)
}
}
}
...
...
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