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Commit 9f604dce authored by Peter van 't Hof's avatar Peter van 't Hof
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Added todo

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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
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......@@ -101,6 +101,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript with SampleLibraryTag {
fb.isIntermediate = true
add(fb)
//TODO: need piping for this
val bz = new Bgzip(qscript)
bz.input = List(fb.outputVcf)
bz.output = outputFile
......
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