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9d86b1ed

Commit 9d86b1ed authored 10 years ago by Sander Bollen

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Fix BamMetrics to use file in stead of directory

Fix markduplicates to not overwrite bam file with metrics file

parent 0267b656

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Changes 3

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 3 additions, 2 deletions

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala 0 additions, 8 deletions

.../main/scala/nl/lumc/sasc/biopet/tools/BedToInterval.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala 1 addition, 1 deletion

...cala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala

with 4 additions and 11 deletions

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