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biopet.biopet
Commits
9a1b11ee
Commit
9a1b11ee
authored
Jul 23, 2015
by
bow
Browse files
Merge branch 'fix-wgs_memory' into 'develop'
Fix wgs memory Just raise memory See merge request !198
parents
3d72e494
5dd4593b
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectWgsMetrics.scala
View file @
9a1b11ee
...
...
@@ -40,6 +40,8 @@ class CollectWgsMetrics(val root: Configurable) extends Picard with Summarizable
@Argument
(
doc
=
"INCLUDE_BQ_HISTOGRAM"
,
required
=
false
)
var
includeBqHistogram
:
Boolean
=
config
(
"include_bq_histogram"
,
default
=
false
)
override
def
defaultCoreMemory
=
6.0
override
def
beforeGraph
()
{
super
.
beforeGraph
()
if
(
reference
==
null
)
reference
=
referenceFasta
()
...
...
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