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99f13260

Commit 99f13260 authored 8 years ago by Peter van 't Hof

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Added flagstats to bamstats

parent 498358c5

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biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/BiopetFlagstat.scala 2 additions, 1 deletion

...nl/lumc/sasc/biopet/extensions/tools/BiopetFlagstat.scala
biopet-tools-package/src/main/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala 2 additions, 1 deletion

...ain/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala 0 additions, 242 deletions

...main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala 9 additions, 6 deletions

...n/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStats.scala
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/bamstats/Stats.scala 9 additions, 0 deletions

...main/scala/nl/lumc/sasc/biopet/tools/bamstats/Stats.scala
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/flagstat/BiopetFlagstat.scala 81 additions, 0 deletions

...a/nl/lumc/sasc/biopet/tools/flagstat/BiopetFlagstat.scala
biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/flagstat/FlagstatCollector.scala 201 additions, 0 deletions

...l/lumc/sasc/biopet/tools/flagstat/FlagstatCollector.scala
biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/bamstats/StatsTest.scala 2 additions, 2 deletions

.../scala/nl/lumc/sasc/biopet/tools/bamstats/StatsTest.scala
biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/flagstat/BiopetFlagstatTest.scala 1 addition, 1 deletion

.../lumc/sasc/biopet/tools/flagstat/BiopetFlagstatTest.scala

with 307 additions and 253 deletions

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