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biopet.biopet
Commits
93724710
Commit
93724710
authored
Sep 22, 2015
by
Peter van 't Hof
Browse files
Made output of bwamem pipeable
parent
b17079d8
Changes
1
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public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/bwa/BwaMem.scala
View file @
93724710
...
...
@@ -111,6 +111,6 @@ class BwaMem(val root: Configurable) extends Bwa with Reference {
required
(
reference
)
+
required
(
R1
)
+
optional
(
R2
)
+
" > "
+
required
(
output
)
(
if
(
outputAsStsout
)
""
else
" > "
+
required
(
output
)
)
}
}
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