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Commit 92f6a098 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix match

parent 35315f22
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecord.scala
+ 4
− 4
View file @ 92f6a098
...@@ -48,14 +48,14 @@ case class BedRecord(chr: String, ...@@ -48,14 +48,14 @@ case class BedRecord(chr: String,
} else None } else None
lazy val utr5 = (strand, thickStart, thickEnd) match { lazy val utr5 = (strand, thickStart, thickEnd) match {
case (Some("+"), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, start, tStart - 1, name.map(_ + "_utr5"))) case (Some(true), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, start, tStart - 1, name.map(_ + "_utr5")))
case (Some("-"), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, tEnd + 1, end, name.map(_ + "_utr5"))) case (Some(false), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, tEnd + 1, end, name.map(_ + "_utr5")))
case _ => None case _ => None
} }
lazy val utr3 = (strand, thickStart, thickEnd) match { lazy val utr3 = (strand, thickStart, thickEnd) match {
case (Some("-"), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, start, tStart - 1, name.map(_ + "_utr3"))) case (Some(false), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, start, tStart - 1, name.map(_ + "_utr3")))
case (Some("+"), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, tEnd + 1, end, name.map(_ + "_utr3"))) case (Some(true), Some(tStart), Some(tEnd)) => Some(BedRecord(chr, tEnd + 1, end, name.map(_ + "_utr3")))
case _ => None case _ => None
} }
......
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