Commit 925f5b4d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changes defaults

parent 1393cff0
......@@ -14,7 +14,18 @@ class GearsQiimeRtax(val root: Configurable) extends QScript with BiopetQScript
var fastaR2: Option[File] = None
override def fixedValues = Map("assigntaxonomy" -> Map("assignment_method" -> "rtax"))
override def fixedValues = Map(
"assigntaxonomy" -> Map(
"assignment_method" -> "rtax"
)
)
override def defaults = Map(
"pickotus" -> Map(
"otu_picking_method" -> "uclust_ref",
"suppress_new_clusters" -> true
)
)
def init() = {
require(fastaR1 != null)
......
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