Merge branch 'fix-remove_temp_files' into 'develop'
Fix remove temp files I did see a lot of temp files that where not removed after testing. This will remove all temp files on exit of a tool / test. See merge request !238
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- public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala 1 addition, 0 deletions...scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala
- public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala 1 addition, 0 deletions...s/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFastaTest.scala 3 additions, 0 deletions...la/nl/lumc/sasc/biopet/tools/BastyGenerateFastaTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstatTest.scala 1 addition, 0 deletions.../scala/nl/lumc/sasc/biopet/tools/BiopetFlagstatTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala 2 additions, 1 deletion...t/scala/nl/lumc/sasc/biopet/tools/FastqSplitterTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBioTest.scala 1 addition, 0 deletions...ala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBioTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/MpileupToVcfTest.scala 3 additions, 0 deletions...st/scala/nl/lumc/sasc/biopet/tools/MpileupToVcfTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/PrefixFastqTest.scala 2 additions, 0 deletions...est/scala/nl/lumc/sasc/biopet/tools/PrefixFastqTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala 1 addition, 0 deletions.../scala/nl/lumc/sasc/biopet/tools/SageCountFastqTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/SageCreateLibaryTest.scala 8 additions, 0 deletions...cala/nl/lumc/sasc/biopet/tools/SageCreateLibaryTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/SageCreateTagCountsTest.scala 8 additions, 0 deletions...a/nl/lumc/sasc/biopet/tools/SageCreateTagCountsTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/SamplesTsvToJsonTest.scala 4 additions, 0 deletions...cala/nl/lumc/sasc/biopet/tools/SamplesTsvToJsonTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/SummaryToTsvTest.scala 1 addition, 0 deletions...st/scala/nl/lumc/sasc/biopet/tools/SummaryToTsvTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala 21 additions, 14 deletions...test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VepNormalizerTest.scala 18 additions, 12 deletions...t/scala/nl/lumc/sasc/biopet/tools/VepNormalizerTest.scala
- public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala 5 additions, 1 deletion...ain/scala/nl/lumc/sasc/biopet/utils/rscript/Rscript.scala
- public/biopet-utils/src/test/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala 1 addition, 0 deletions...est/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala
- public/biopet-utils/src/test/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordListTest.scala 5 additions, 7 deletions.../lumc/sasc/biopet/utils/intervals/BedRecordListTest.scala
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