Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
8bb2e6d9
Commit
8bb2e6d9
authored
May 09, 2016
by
Sander Bollen
Browse files
fix stuff that went wrong during merge
parent
0f4c6e15
Changes
1
Hide whitespace changes
Inline
Side-by-side
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/HaplotypeCallerGvcf.scala
View file @
8bb2e6d9
...
...
@@ -27,7 +27,7 @@ class HaplotypeCallerGvcf(val root: Configurable) extends Variantcaller {
sample
->
hc
.
out
}
val
genotypeGVCFs
=
gatk
.
GenotypeGVCFs
(
this
,
gvcfFiles
.
toList
,
outputFile
)
val
genotypeGVCFs
=
gatk
.
GenotypeGVCFs
(
this
,
gvcfFiles
.
values
.
toList
,
outputFile
)
add
(
genotypeGVCFs
)
}
}
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment