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Commit 8bb2e6d9 authored by Sander Bollen's avatar Sander Bollen
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fix stuff that went wrong during merge

parent 0f4c6e15
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/HaplotypeCallerGvcf.scala
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View file @ 8bb2e6d9
......@@ -27,7 +27,7 @@ class HaplotypeCallerGvcf(val root: Configurable) extends Variantcaller {
sample -> hc.out
}
val genotypeGVCFs = gatk.GenotypeGVCFs(this, gvcfFiles.toList, outputFile)
val genotypeGVCFs = gatk.GenotypeGVCFs(this, gvcfFiles.values.toList, outputFile)
add(genotypeGVCFs)
}
}
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