Commit 8b41d86d authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Code style fixes

parent 7ed7593c
......@@ -3,9 +3,9 @@ package nl.lumc.sasc.biopet.tools
import java.io.File
import java.util
import htsjdk.samtools.reference.{ FastaSequenceFile, ReferenceSequenceFileFactory }
import htsjdk.samtools.reference.FastaSequenceFile
import htsjdk.variant.variantcontext.writer.{ AsyncVariantContextWriter, Options, VariantContextWriterBuilder }
import htsjdk.variant.variantcontext.{ Allele, GenotypeBuilder, VariantContextBuilder }
import htsjdk.variant.variantcontext.{ Allele, VariantContextBuilder }
import htsjdk.variant.vcf._
import nl.lumc.sasc.biopet.utils.ToolCommand
......
......@@ -8,11 +8,11 @@ import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by pjvan_thof on 4/11/16.
*/
* Created by pjvan_thof on 4/11/16.
*/
class GensToVcfTest extends TestNGSuite with Matchers {
@Test
def testGensOnly: Unit = {
def testGensOnly(): Unit = {
val output = File.createTempFile("test.", ".vcf.gz")
output.deleteOnExit()
GensToVcf.main(Array(
......@@ -25,7 +25,7 @@ class GensToVcfTest extends TestNGSuite with Matchers {
}
@Test
def testGensInfo: Unit = {
def testGensInfo(): Unit = {
val output = File.createTempFile("test.", ".vcf")
output.deleteOnExit()
GensToVcf.main(Array(
......
......@@ -8,11 +8,11 @@ import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by pjvan_thof on 4/11/16.
*/
* Created by pjvan_thof on 4/11/16.
*/
class SnptestToVcfTest extends TestNGSuite with Matchers {
@Test
def testSnptest: Unit = {
def testSnptest(): Unit = {
val output = File.createTempFile("test.", ".vcf.gz")
output.deleteOnExit()
SnptestToVcf.main(Array(
......@@ -24,7 +24,7 @@ class SnptestToVcfTest extends TestNGSuite with Matchers {
}
@Test
def testEmptySnptest: Unit = {
def testEmptySnptest(): Unit = {
val output = File.createTempFile("test.", ".vcf.gz")
output.deleteOnExit()
SnptestToVcf.main(Array(
......
......@@ -11,8 +11,8 @@ import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by pjvan_thof on 4/11/16.
*/
* Created by pjvan_thof on 4/11/16.
*/
class GwasTestTest extends TestNGSuite with Matchers {
def initPipeline(map: Map[String, Any]): GwasTest = {
new GwasTest {
......@@ -60,7 +60,6 @@ class GwasTestTest extends TestNGSuite with Matchers {
pipeline.script()
}
@Test
def testEmpty: Unit = {
val pipeline = initPipeline(GwasTestTest.config)
......
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