Merge branch 'fix-BIOPET-486' into 'develop'

Fixing fix-BIOPET-486 See merge request !507

Merge branch 'fix-BIOPET-486' into 'develop'
Fixing fix-BIOPET-486 See merge request !507
8b3579f3 · Sander Bollen · bae8c53d · 2754750c · 8b3579f3
Commit 8b3579f3 authored Jan 06, 2017 by Sander Bollen
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Breakdancer.scala ...c/sasc/biopet/pipelines/shiva/svcallers/Breakdancer.scala +1 -0

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--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Breakdancer.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Breakdancer.scala
@@ -31,6 +31,7 @@ class Breakdancer(val root: Configurable) extends SvCaller {

      val bdcfg = BreakdancerConfig(this, bamFile, new File(breakdancerSampleDir, sample + ".breakdancer.cfg"))
      val breakdancer = BreakdancerCaller(this, bdcfg.output, new File(breakdancerSampleDir, sample + ".breakdancer.tsv"))
+      breakdancer.deps :+= bamFile
      val bdvcf = BreakdancerVCF(this, breakdancer.output, new File(breakdancerSampleDir, sample + ".breakdancer.vcf"),
        sample = sample + sampleNameSuffix)