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867eac4c

Commit 867eac4c authored 9 years ago by Wai Yi Leung

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Merge branch 'fix-gears_single_end' into 'develop'

Fix for gears single end bam files

Fixes #287 

See merge request !337

parents 3fb5cf10 c28c5c82

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala 2 additions, 2 deletions

.../scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala
public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala 5 additions, 5 deletions

...ls/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala 13 additions, 6 deletions

...mc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala 20 additions, 2 deletions

...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala 2 additions, 1 deletion

...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala

with 42 additions and 16 deletions

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