Commit 85f91910 authored by bow's avatar bow
Browse files

Add CollectRnaSeqMetrics histogram to summary file

parent 657d8684
......@@ -85,7 +85,9 @@ class CollectRnaSeqMetrics(val root: Configurable) extends Picard with Summariza
"output_chart" -> chartOutput
).collect { case (key, Some(value)) => key -> value }
def summaryStats = Picard.getMetrics(output).getOrElse(Map())
def summaryStats = Map(
"metrics" -> Picard.getMetrics(output).getOrElse(Map()),
"histogram" -> Picard.getHistogram(output).getOrElse(Map()))
override def commandLine = super.commandLine +
required("INPUT=", input, spaceSeparated = false) +
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment