Commit 85495563 authored by wyleung's avatar wyleung
Browse files

Netbeans configurations on formatting using CheckStyle plugin

parent 1c9ffeef
......@@ -23,5 +23,6 @@ Any value defined here will override the pom.xml file value but is only applicab
<com-junichi11-netbeans-changelf.use-project>true</com-junichi11-netbeans-changelf.use-project>
<com-junichi11-netbeans-changelf.lf-kind>CRLF</com-junichi11-netbeans-changelf.lf-kind>
<com-junichi11-netbeans-changelf.use-global>false</com-junichi11-netbeans-changelf.use-global>
<netbeans.checkstyle.format>true</netbeans.checkstyle.format>
</properties>
</project-shared-configuration>
......@@ -45,7 +45,7 @@ class Bwa(val root: Configurable) extends BiopetCommandLineFunction {
var a: Boolean = config("a")
var C: Boolean = config("C")
var Y: Boolean = config("Y")
var I: String = config("I")
var I: String = config("I")
executable = config("exe", default = "bwa", freeVar = false)
override val versionRegex = """Version: (.*)""".r
......@@ -80,14 +80,14 @@ class Bwa(val root: Configurable) extends BiopetCommandLineFunction {
optional("-L", L) +
optional("-U", U) +
optional("-x", x) +
conditional(p, "-p") +
conditional(p, "-p") +
optional("-v", v) +
optional("-T", T) +
optional("-h", h) +
conditional(a, "-a") +
conditional(C, "-C") +
conditional(Y, "-Y") +
optional("-I", I) +
optional("-I", I) +
required(reference) +
required(R1) +
optional(R2) +
......
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