Skip to content
Snippets Groups Projects
Commit 818741d1 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix small genomes

parent 836310ca
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
+ 1
− 1
View file @ 818741d1
......@@ -347,7 +347,7 @@ object VcfStats extends ToolCommand {
}
// Triple for loop to not keep all bins in memory
val stats = (for (intervals <- Random.shuffle(intervals).grouped(intervals.size / 4).toList.par) yield {
val stats = (for (intervals <- Random.shuffle(intervals).grouped(intervals.size / (if (intervals.size > 10) 4 else 1)).toList.par) yield {
val chunkStats = for (intervals <- intervals.grouped(25)) yield {
val binStats = for (interval <- intervals.par) yield {
val reader = new VCFFileReader(commandArgs.inputFile, true)
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment