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Commit 8035d76b authored by Peter van 't Hof's avatar Peter van 't Hof
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Rename package to workaround

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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/PipelineCommand.scala
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package nl.lumc.sasc.biopet.core
import org.broadinstitute.gatk.queue.util.{ Logging => GatkLogging }
import nl.lumc.sasc.biopet.core.broad.BiopetQCommandLine
import nl.lumc.sasc.biopet.core.workaround.BiopetQCommandLine
trait PipelineCommand extends MainCommand with GatkLogging {
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/broad/BiopetQCommandLine.scala → biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/workaround/BiopetQCommandLine.scala
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View file @ 8035d76b
......@@ -24,7 +24,7 @@
* THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*/
package nl.lumc.sasc.biopet.core.broad
package nl.lumc.sasc.biopet.core.workaround
import java.io.File
import org.broadinstitute.gatk.utils.commandline._
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