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Commit 7f48f593 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed code warnings

parent 1b5553ec
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Showing with 4 additions and 2 deletions
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsReport.scala
View file @ 7f48f593
......@@ -4,6 +4,8 @@ import nl.lumc.sasc.biopet.core.report.{ ReportSection, ReportPage, MultisampleR
import nl.lumc.sasc.biopet.utils.config.Configurable
/**
* Report for Gears
*
* Created by pjvan_thof on 12/10/15.
*/
class GearsReport(val root: Configurable) extends ReportBuilderExtension {
......@@ -51,10 +53,10 @@ object GearsReport extends MultisampleReportBuilder {
val krakenExecuted = summary.getValue(Some(sampleId), Some(libId), "gearskraken", "stats", "krakenreport").isDefined
ReportPage(
(if (krakenExecuted) List("Gears - Metagenomics" -> ReportPage(List(), List(
if (krakenExecuted) List("Gears - Metagenomics" -> ReportPage(List(), List(
"Sunburst analysis" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/gearsSunburst.ssp"
)), Map()))
else Nil), List(
else Nil, List(
"QC reads" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"),
"QC bases" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp")
), args)
......
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