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7d8f335d

Commit 7d8f335d authored 10 years ago by Peter van 't Hof

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Added tagcounting to Sage pipeline

parent ce8bb5c9

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Changes 6

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biopet-framework/nbactions.xml 3 additions, 3 deletions

biopet-framework/nbactions.xml
biopet-framework/pom.xml 17 additions, 1 deletion

biopet-framework/pom.xml
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/CountFastq.scala 75 additions, 0 deletions

...scala/nl/lumc/sasc/biopet/pipelines/sage/CountFastq.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/CreateDeepsageLibrary.scala 181 additions, 0 deletions

...mc/sasc/biopet/pipelines/sage/CreateDeepsageLibrary.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/CreateTagCounts.scala 134 additions, 0 deletions

.../nl/lumc/sasc/biopet/pipelines/sage/CreateTagCounts.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala 50 additions, 12 deletions

.../main/scala/nl/lumc/sasc/biopet/pipelines/sage/Sage.scala

with 460 additions and 16 deletions

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