Commit 786871f5 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed default value

parent 33b91781
......@@ -156,7 +156,7 @@ class HaplotypeCaller(val root: Configurable) extends CommandLineGATK with Scatt
/** The set of alleles at which to genotype when --genotyping_mode is GENOTYPE_GIVEN_ALLELES */
@Input(fullName = "alleles", shortName = "alleles", doc = "The set of alleles at which to genotype when --genotyping_mode is GENOTYPE_GIVEN_ALLELES", required = false, exclusiveOf = "", validation = "")
var alleles: Option[File] = _
var alleles: Option[File] = None
/** Fraction of contamination in sequencing data (for all samples) to aggressively remove */
@Argument(fullName = "contamination_fraction_to_filter", shortName = "contamination", doc = "Fraction of contamination in sequencing data (for all samples) to aggressively remove", required = false, exclusiveOf = "", validation = "")
......
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