Merge remote-tracking branch 'remotes/origin/develop' into feature-gentrap_report

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala

public/biopet-extensions/pom.xml

...l/lumc/sasc/biopet/extensions/bcftools/BcftoolsView.scala

.../lumc/sasc/biopet/extensions/bedtools/BedtoolsMerge.scala

...scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala

...in/scala/nl/lumc/sasc/biopet/extensions/manwe/Manwe.scala

.../lumc/sasc/biopet/extensions/manwe/ManweAnnotateBed.scala

.../lumc/sasc/biopet/extensions/manwe/ManweAnnotateVcf.scala

...sc/biopet/extensions/manwe/ManweDataSourcesAnnotate.scala

...sc/biopet/extensions/manwe/ManweDataSourcesDownload.scala

...c/sasc/biopet/extensions/manwe/ManweDataSourcesList.scala

...c/sasc/biopet/extensions/manwe/ManweDataSourcesShow.scala

...c/sasc/biopet/extensions/manwe/ManweSamplesActivate.scala

...l/lumc/sasc/biopet/extensions/manwe/ManweSamplesAdd.scala

...pet/extensions/manwe/ManweSamplesAnnotateVariations.scala

...umc/sasc/biopet/extensions/manwe/ManweSamplesImport.scala

.../sasc/biopet/extensions/manwe/ManweSamplesImportBed.scala

.../sasc/biopet/extensions/manwe/ManweSamplesImportVcf.scala

.../lumc/sasc/biopet/extensions/manwe/ManweSamplesList.scala

.../lumc/sasc/biopet/extensions/manwe/ManweSamplesShow.scala