Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
74c4a239
Commit
74c4a239
authored
Jun 07, 2015
by
Peter van 't Hof
Browse files
Added collapse tables
parent
0e258d48
Changes
5
Hide whitespace changes
Inline
Side-by-side
public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp
View file @
74c4a239
...
...
@@ -26,12 +26,15 @@
<img src="alignmentSummary.png" class="img-responsive" />
</div>
<div class="panel-footer">
#if (showTable)
<button type="button" class="btn btn-info" data-toggle="collapse" data-target="#alignmentSummaryTable">Show table</button>
#end
<i class="glyphicon glyphicon-file"></i> <a href="alignmentSummary.tsv">tsv file</a>
</div>
#end
#if (showTable)
<div class="panel-body">
<div class="panel-body
collapse" id="alignmentSummaryTable
">
<!-- Table -->
<table class="table sortable-theme-bootstrap" data-sortable>
<thead><tr>
...
...
@@ -42,7 +45,6 @@
<th>(%)</th>
<th>Duplicates</th>
<th>(%)</th>
<th>Insert size</th>
</tr></thead>
<tbody>
#for (sample <- samples.toList.sorted)
...
...
@@ -62,14 +64,12 @@
val total = summary.getValue((prefixPath ::: List("biopet_flagstat", "All")):_*).getOrElse(0L).asInstanceOf[Long]
val mapped = summary.getValue((prefixPath ::: List("biopet_flagstat", "Mapped")):_*).getOrElse(0L).asInstanceOf[Long]
val duplicates = summary.getValue((prefixPath ::: List("biopet_flagstat", "Duplicates")):_*).getOrElse(0L).asInstanceOf[Long]
val insertsizeMean = summary.getValue((prefixPath ::: List("insert_size_metrics", "mean_insert_size")):_*)
}#
<td>${total}</td>
<td>${mapped}</td>
<td>${mapped.toDouble / total * 100}%</td>
<td>${duplicates}</td>
<td>${duplicates.toDouble / total * 100}%</td>
<td>${insertsizeMean}</td>
</tr>
#end
#end
...
...
public/bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp
View file @
74c4a239
...
...
@@ -29,11 +29,14 @@
<img src="insertsize.png" class="img-responsive" />
</div>
<div class="panel-footer">
<i class="glyphicon glyphicon-file"></i> <a href="insertsize.tsv">tsv file</a>
#if (showTable)
<button type="button" class="btn btn-info" data-toggle="collapse" data-target="#insertsizeTable">Show table</button>
#end
<i class="glyphicon glyphicon-file"></i> <a href="insertsize.tsv">tsv file</a>
</div>
#end
#if (showTable)
<div class="panel-body">
<div class="panel-body
collapse" id="insertsizeTable
">
<!-- Table -->
<table class="table sortable-theme-bootstrap" data-sortable>
<thead><tr>
...
...
public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp
View file @
74c4a239
...
...
@@ -32,12 +32,15 @@
</div>
<div class="panel-footer">
#if (showTable)
<button type="button" class="btn btn-info" data-toggle="collapse" data-target="#QC_BasesTable">Show table</button>
#end
<i class="glyphicon glyphicon-file"></i> <a href="QC_Bases_R1.tsv">R1 reads stats</a> -
<i class="glyphicon glyphicon-file"></i> <a href="QC_Bases_R2.tsv">R2 reads stats</a>
</div>
#end
#if (showTable)
<div class="panel-body">
<div class="panel-body
collapse" id="QC_BasesTable
">
<!-- Table -->
<table class="table sortable-theme-bootstrap" data-sortable>
...
...
public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp
View file @
74c4a239
...
...
@@ -33,12 +33,15 @@
</div>
<div class="panel-footer">
#if (showTable)
<button type="button" class="btn btn-info" data-toggle="collapse" data-target="#QC_ReadsTable">Show table</button>
#end
<i class="glyphicon glyphicon-file"></i> <a href="QC_Reads_R1.tsv">R1 reads stats</a> -
<i class="glyphicon glyphicon-file"></i> <a href="QC_Reads_R2.tsv">R2 reads stats</a>
</div>
#end
#if (showTable)
<div class="panel-body">
<div class="panel-body
collapse" id="QC_ReadsTable
">
<!-- Table -->
<table class="table sortable-theme-bootstrap" data-sortable>
...
...
public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp
View file @
74c4a239
...
...
@@ -22,11 +22,14 @@
<img src="variantSummary.png" class="img-responsive" />
</div>
<div class="panel-footer">
#if (showTable)
<button type="button" class="btn btn-info" data-toggle="collapse" data-target="#variantSummaryTable">Show table</button>
#end
<i class="glyphicon glyphicon-file"></i> <a href="variantSummary.tsv">tsv file</a>
</div>
#end
#if (showTable)
<div class="panel-body">
<div class="panel-body
collapse" id="variantSummaryTable
">
<!-- Table -->
<table class="table sortable-theme-bootstrap" data-sortable>
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment