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73342d82

Commit 73342d82 authored 8 years ago by bow

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Merge branch 'feature-vcf_reference_check' into 'develop'

Force reference dict in vcf to check on unknown contigs

Fixes #179 

See merge request !378

parents 8a322f5c c093c17c

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public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfWithVcf.scala 7 additions, 2 deletions

...ala/nl/lumc/sasc/biopet/extensions/tools/VcfWithVcf.scala
public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala 21 additions, 2 deletions

...src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala
public/biopet-tools/src/test/resources/VEP_oneline.vcf 2 additions, 85 deletions

public/biopet-tools/src/test/resources/VEP_oneline.vcf
public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz 0 additions, 0 deletions

public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi 0 additions, 0 deletions

...ic/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
public/biopet-tools/src/test/resources/unvep_online.vcf 78 additions, 0 deletions

public/biopet-tools/src/test/resources/unvep_online.vcf
public/biopet-tools/src/test/resources/unvep_online.vcf.gz 0 additions, 0 deletions

public/biopet-tools/src/test/resources/unvep_online.vcf.gz
public/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi 0 additions, 0 deletions

...c/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi
public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala 26 additions, 16 deletions

...test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala

with 134 additions and 105 deletions

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