Commit 6f44aea3 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Moved Sage tools to nl.lumc.biopet.tools

parent d8697889
......@@ -30,9 +30,9 @@ object BiopetExecutable {
nl.lumc.sasc.biopet.tools.MpileupToVcf,
nl.lumc.sasc.biopet.tools.FastqSplitter,
nl.lumc.sasc.biopet.tools.BedtoolsCoverageToCounts,
nl.lumc.sasc.biopet.pipelines.sage.SageCountFastq,
nl.lumc.sasc.biopet.pipelines.sage.SageCreateLibrary,
nl.lumc.sasc.biopet.pipelines.sage.SageCreateTagCounts)
nl.lumc.sasc.biopet.tools.SageCountFastq,
nl.lumc.sasc.biopet.tools.SageCreateLibrary,
nl.lumc.sasc.biopet.tools.SageCreateTagCounts)
)
/**
......
......@@ -10,6 +10,9 @@ import nl.lumc.sasc.biopet.pipelines.mapping.Mapping
import nl.lumc.sasc.biopet.scripts.PrefixFastq
import nl.lumc.sasc.biopet.tools.BedtoolsCoverageToCounts
import nl.lumc.sasc.biopet.scripts.SquishBed
import nl.lumc.sasc.biopet.tools.SageCountFastq
import nl.lumc.sasc.biopet.tools.SageCreateLibrary
import nl.lumc.sasc.biopet.tools.SageCreateTagCounts
import org.broadinstitute.gatk.queue.QScript
import org.broadinstitute.gatk.queue.function._
......
package nl.lumc.sasc.biopet.pipelines.sage
package nl.lumc.sasc.biopet.tools
import java.io.File
import java.io.PrintWriter
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment