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Commit 6f07dcdc authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix args in queue extension

parent c5e27ef2
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Showing with 4 additions and 4 deletions
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SageCreateLibrary.scala
View file @ 6f07dcdc
......@@ -56,8 +56,8 @@ class SageCreateLibrary(val root: Configurable) extends BiopetJavaCommandLineFun
required("-I", input) +
optional("--tag", tag) +
optional("--length", length) +
optional("--notag", noTagsOutput) +
optional("--noantitag", noAntiTagsOutput) +
optional("--noTagsOutput", noTagsOutput) +
optional("--noAntiTagsOutput", noAntiTagsOutput) +
required("-o", output)
}
......@@ -84,7 +84,7 @@ object SageCreateLibrary extends ToolCommand {
opt[File]("noAntiTagsOutput") required () unbounded () valueName ("<file>") action { (x, c) =>
c.copy(noAntiTagsOutput = x)
}
opt[File]("allGenesOutput") required () unbounded () valueName ("<file>") action { (x, c) =>
opt[File]("allGenesOutput") unbounded () valueName ("<file>") action { (x, c) =>
c.copy(allGenesOutput = x)
}
}
......@@ -207,4 +207,4 @@ object SageCreateLibrary extends ToolCommand {
return result
}
}
}
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