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Commit 6b7aaacf authored by sajvanderzeeuw's avatar sajvanderzeeuw
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Changes made to alter the number of GC cores

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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala
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......@@ -6,6 +6,7 @@ import org.broadinstitute.gatk.utils.commandline.{ Input, Output, Argument }
class SamToFastq(val root: Configurable) extends Picard {
javaMainClass = "picard.sam.SamToFastq"
javaGCThreads = config("gcthreads", default = 2)
@Input(doc = "The input SAM or BAM files to analyze.", required = true)
var input: File = _
......
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