Commit 672a25a8 authored by bow's avatar bow
Browse files

Add -f and -F flags to samtools view wrapper

parent 2b26dc69
......@@ -29,10 +29,14 @@ class SamtoolsView(val root: Configurable) extends Samtools {
var quality: Option[Int] = config("quality")
var b: Boolean = config("b")
var h: Boolean = config("h")
var f: List[String] = config("f")
var F: List[String] = config("F")
def cmdBase = required(executable) +
required("view") +
optional("-q", quality) +
optional("-f", f) +
optional("-F", F) +
conditional(b, "-b") +
conditional(h, "-h")
def cmdPipeInput = cmdBase + "-"
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment