Commit 66f989df authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added sample and library to flexiprep

parent b1188f46
......@@ -160,6 +160,8 @@ class Mapping(val root: Configurable) extends QScript with BiopetQScript {
flexiprep.input_R1 = fastq_R1
if (paired) flexiprep.input_R2 = fastq_R2
if (chunking) flexiprep.skipSummary = true
flexiprep.sampleName = this.RGSM
flexiprep.libraryName = this.RGLB
flexiprep.init
flexiprep.runInitialJobs
//flexiprep.biopetScript
......
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