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biopet.biopet
Commits
64c3d40e
Commit
64c3d40e
authored
Jun 27, 2016
by
Peter van 't Hof
Browse files
More fail safe testing
parent
c2ff92e7
Changes
1
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Inline
Side-by-side
gears/src/test/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsTest.scala
View file @
64c3d40e
...
...
@@ -17,12 +17,12 @@ package nl.lumc.sasc.biopet.pipelines.gears
import
java.io.File
import
com.google.common.io.Files
import
nl.lumc.sasc.biopet.utils.ConfigUtils
import
nl.lumc.sasc.biopet.utils.
{
ConfigUtils
,
Logging
}
import
nl.lumc.sasc.biopet.utils.config.Config
import
org.broadinstitute.gatk.queue.QSettings
import
org.scalatest.Matchers
import
org.scalatest.testng.TestNGSuite
import
org.testng.annotations.
{
DataProvider
,
Test
}
import
org.testng.annotations.
{
DataProvider
,
Test
}
/**
* Created by pjvanthof on 04/02/16.
...
...
@@ -75,6 +75,7 @@ abstract class GearsTest extends TestNGSuite with Matchers {
intercept
[
IllegalArgumentException
]
{
initPipeline
(
map
).
script
()
}
Logging
.
errors
.
clear
()
}
else
{
val
pipeline
=
initPipeline
(
map
)
pipeline
.
script
()
...
...
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