Added initial version of release notes

docs/releasenotes/release_notes_0.7.0.md

+# Release notes Biopet version 0.6.0
+
+## General Code changes
+
+* Switch to full public licence
+* Upgrade to Queue 3.6
+ * Upgrade to java 8
+ * Upgrade to PIcard / htsjdk 2.4.1
+
+## Functionality
+
+* [Gears](../pipelines/gears.md): Added open reference module of Qiime(http://qiime.org/)
+* Fixed default aligner in [Gentrap](../pipelines/gentrap.md) to gsnap
+* Makes sample and library id required in [Flexiprep](../pipelines/flexiprep.md)
+* Raise some default memory limits
+* Fixed a non-required value in Shiva
+* Added an auto detect for MACS2 if sample is single-end or paired-end
+* Added a sort by name step when htseq in Gentrap is executed
+* Fixed file name of bam files in Carp
+* Report now corrects for secondary reads in alignment stats
+* VcfWithVcf now checks if chromosomes are in the correct reference
+* Added sync stats to flexiprep report
+* Added check in BamMetrics to check a given bed file is acording to the reference that is used on init of pipeline
\ No newline at end of file

mkdocs.yml

@@ -36,6 +36,7 @@ pages:
     - VcfFilter: 'tools/VcfFilter.md'
     - VepNormalizer: 'tools/VepNormalizer.md'
 - Release notes:
+    - 0.7.0: 'releasenotes/release_notes_0.7.0.md'
     - 0.6.0: 'releasenotes/release_notes_0.6.0.md'
     - 0.5.0: 'releasenotes/release_notes_0.5.0.md'
     - 0.4.0: 'releasenotes/release_notes_0.4.0.md'