@@ -68,11 +69,11 @@ trait CommandLineGATK extends BiopetJavaCommandLineFunction with Reference with
/** Set merging approach to use for combining interval inputs */
@Argument(fullName="interval_set_rule",shortName="isr",doc="Set merging approach to use for combining interval inputs",required=false,exclusiveOf="",validation="")
/** Amount of padding (in bp) to add to each interval */
@Argument(fullName="interval_padding",shortName="ip",doc="Amount of padding (in bp) to add to each interval",required=false,exclusiveOf="",validation="")
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@@ -317,6 +318,14 @@ trait CommandLineGATK extends BiopetJavaCommandLineFunction with Reference with