Commit 613c89ec authored 8 years ago by Peter van 't Hof

Fixed scattering

parent 23fb609a

No related branches found

No related tags found

No related merge requests found

Hide whitespace changes

Inline Side-by-side

Showing

biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/AnalyzeCovariates.scala 0 additions, 1 deletion

...sasc/biopet/extensions/gatk/broad/AnalyzeCovariates.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/ApplyRecalibration.scala 1 addition, 1 deletion

...asc/biopet/extensions/gatk/broad/ApplyRecalibration.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/BaseRecalibrator.scala 2 additions, 2 deletions

.../sasc/biopet/extensions/gatk/broad/BaseRecalibrator.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/CombineGVCFs.scala 1 addition, 1 deletion

...lumc/sasc/biopet/extensions/gatk/broad/CombineGVCFs.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/CombineVariants.scala 1 addition, 1 deletion

...c/sasc/biopet/extensions/gatk/broad/CombineVariants.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/CommandLineGATK.scala 11 additions, 2 deletions

...c/sasc/biopet/extensions/gatk/broad/CommandLineGATK.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/ContigScatterFunction.scala 23 additions, 0 deletions

.../biopet/extensions/gatk/broad/ContigScatterFunction.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/GatkScatterFunction.scala 95 additions, 0 deletions

...sc/biopet/extensions/gatk/broad/GatkScatterFunction.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/GenotypeGVCFs.scala 1 addition, 1 deletion

...umc/sasc/biopet/extensions/gatk/broad/GenotypeGVCFs.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala 0 additions, 1 deletion

...c/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/IndelRealigner.scala 2 additions, 2 deletions

...mc/sasc/biopet/extensions/gatk/broad/IndelRealigner.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/LocusScatterFunction.scala 18 additions, 0 deletions

...c/biopet/extensions/gatk/broad/LocusScatterFunction.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/PrintReads.scala 2 additions, 2 deletions

...l/lumc/sasc/biopet/extensions/gatk/broad/PrintReads.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/RealignerTargetCreator.scala 1 addition, 1 deletion

...biopet/extensions/gatk/broad/RealignerTargetCreator.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/SelectVariants.scala 1 addition, 1 deletion

...mc/sasc/biopet/extensions/gatk/broad/SelectVariants.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala 1 addition, 1 deletion

.../sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/VariantAnnotator.scala 1 addition, 1 deletion

.../sasc/biopet/extensions/gatk/broad/VariantAnnotator.scala

with 161 additions and 18 deletions

Please register or to comment