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biopet.biopet
Commits
5f95892e
Commit
5f95892e
authored
Sep 15, 2016
by
Peter van 't Hof
Browse files
change to non-freevar
parent
f072f096
Changes
1
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
View file @
5f95892e
...
...
@@ -40,7 +40,7 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction =>
def
defaultRemoteCommand
=
"bash"
private
val
remoteCommand
:
String
=
config
(
"remote_command"
,
default
=
defaultRemoteCommand
)
val
preCommands
:
List
[
String
]
=
config
(
"pre_commands"
,
default
=
Nil
)
val
preCommands
:
List
[
String
]
=
config
(
"pre_commands"
,
default
=
Nil
,
freeVar
=
false
)
private
def
changeScript
(
file
:
File
)
:
Unit
=
{
val
lines
=
Source
.
fromFile
(
file
).
getLines
().
toList
...
...
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