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biopet.biopet
Commits
5d9efd89
Commit
5d9efd89
authored
Nov 22, 2014
by
Peter van 't Hof
Browse files
Fix on exe
parent
023005b3
Changes
2
Hide whitespace changes
Inline
Side-by-side
protected/biopet-protected-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutableProtected.scala
View file @
5d9efd89
package
nl.lumc.sasc.biopet.core
trai
t
BiopetExecutableProtected
extends
BiopetExecutable
Public
{
override
def
pipelines
:
List
[
MainCommand
]
=
super
.
pipelines
:::
List
(
objec
t
BiopetExecutableProtected
extends
BiopetExecutable
{
def
pipelines
:
List
[
MainCommand
]
=
BiopetExecutablePublic
.
pipelines
:::
List
(
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gatk
.
GatkBenchmarkGenotyping
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gatk
.
GatkGenotyping
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gatk
.
GatkVariantcalling
,
...
...
@@ -9,4 +9,6 @@ trait BiopetExecutableProtected extends BiopetExecutablePublic {
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gatk
.
GatkVariantRecalibration
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
gatk
.
GatkVcfSampleCompare
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
basty
.
Basty
)
}
def
tools
=
BiopetExecutablePublic
.
tools
}
\ No newline at end of file
public/biopet-public-package/src/main/scala/nl/lumc/sasc/biopet/core/BiopetExecutablePublic.scala
View file @
5d9efd89
package
nl.lumc.sasc.biopet.core
trai
t
BiopetExecutablePublic
extends
BiopetExecutable
{
objec
t
BiopetExecutablePublic
extends
BiopetExecutable
{
def
pipelines
:
List
[
MainCommand
]
=
List
(
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
flexiprep
.
Flexiprep
,
nl
.
lumc
.
sasc
.
biopet
.
pipelines
.
mapping
.
Mapping
,
...
...
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