Commit 5d9efd89 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix on exe

parent 023005b3
package nl.lumc.sasc.biopet.core
trait BiopetExecutableProtected extends BiopetExecutablePublic {
override def pipelines: List[MainCommand] = super.pipelines ::: List(
object BiopetExecutableProtected extends BiopetExecutable {
def pipelines: List[MainCommand] = BiopetExecutablePublic.pipelines ::: List(
nl.lumc.sasc.biopet.pipelines.gatk.GatkBenchmarkGenotyping,
nl.lumc.sasc.biopet.pipelines.gatk.GatkGenotyping,
nl.lumc.sasc.biopet.pipelines.gatk.GatkVariantcalling,
......@@ -9,4 +9,6 @@ trait BiopetExecutableProtected extends BiopetExecutablePublic {
nl.lumc.sasc.biopet.pipelines.gatk.GatkVariantRecalibration,
nl.lumc.sasc.biopet.pipelines.gatk.GatkVcfSampleCompare,
nl.lumc.sasc.biopet.pipelines.basty.Basty)
}
def tools = BiopetExecutablePublic.tools
}
\ No newline at end of file
package nl.lumc.sasc.biopet.core
trait BiopetExecutablePublic extends BiopetExecutable {
object BiopetExecutablePublic extends BiopetExecutable {
def pipelines: List[MainCommand] = List(
nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep,
nl.lumc.sasc.biopet.pipelines.mapping.Mapping,
......
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