Commit 5b602ecf authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed args for pickRepSet

parent cfe22b5c
......@@ -40,6 +40,7 @@ class GearsQiimeRtax(val root: Configurable) extends QScript with BiopetQScript
val pickRepSet = new PickRepSet(this)
val repSetOutputDir = new File(outputDir, "pick_rep_set")
pickRepSet.inputFile = pickOtus.otusTxt
pickRepSet.fastaInput = Some(fastaR1)
pickRepSet.outputFasta = Some(new File(repSetOutputDir, fastaR1.getName))
pickRepSet.logFile = Some(new File(repSetOutputDir, fastaR1.getName
.stripSuffix(".fasta").stripSuffix(".fa").stripSuffix(".fna") + ".log"))
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