Update IntelliJ files

5abe8248 · bow · c6f4c405 · 5abe8248 · 5abe8248 · 5abe8248
Commit 5abe8248 authored 10 years ago by bow
--- a/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_queue_extensions_distribution_3_3.xml
+++ b/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_queue_extensions_distribution_3_3.xml
+<component name="libraryTable">
+  <library name="Maven: org.broadinstitute.gatk:gatk-queue-extensions-distribution:3.3">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-distribution/3.3/gatk-queue-extensions-distribution-3.3.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-distribution/3.3/gatk-queue-extensions-distribution-3.3-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-distribution/3.3/gatk-queue-extensions-distribution-3.3-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_queue_extensions_generator_3_3.xml
+++ b/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_queue_extensions_generator_3_3.xml
+<component name="libraryTable">
+  <library name="Maven: org.broadinstitute.gatk:gatk-queue-extensions-generator:3.3">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-generator/3.3/gatk-queue-extensions-generator-3.3.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-generator/3.3/gatk-queue-extensions-generator-3.3-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-queue-extensions-generator/3.3/gatk-queue-extensions-generator-3.3-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_tools_protected_3_3.xml
+++ b/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_tools_protected_3_3.xml
+<component name="libraryTable">
+  <library name="Maven: org.broadinstitute.gatk:gatk-tools-protected:3.3">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-protected/3.3/gatk-tools-protected-3.3.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-protected/3.3/gatk-tools-protected-3.3-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-protected/3.3/gatk-tools-protected-3.3-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_tools_public_3_3.xml
+++ b/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_tools_public_3_3.xml
+<component name="libraryTable">
+  <library name="Maven: org.broadinstitute.gatk:gatk-tools-public:3.3">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-public/3.3/gatk-tools-public-3.3.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-public/3.3/gatk-tools-public-3.3-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-tools-public/3.3/gatk-tools-public-3.3-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_utils_3_3.xml
+++ b/.idea/libraries/Maven__org_broadinstitute_gatk_gatk_utils_3_3.xml
+<component name="libraryTable">
+  <library name="Maven: org.broadinstitute.gatk:gatk-utils:3.3">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-utils/3.3/gatk-utils-3.3.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-utils/3.3/gatk-utils-3.3-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/broadinstitute/gatk/gatk-utils/3.3/gatk-utils-3.3-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_freemarker_freemarker_2_3_18.xml
+++ b/.idea/libraries/Maven__org_freemarker_freemarker_2_3_18.xml
+<component name="libraryTable">
+  <library name="Maven: org.freemarker:freemarker:2.3.18">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/freemarker/freemarker/2.3.18/freemarker-2.3.18.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/freemarker/freemarker/2.3.18/freemarker-2.3.18-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/freemarker/freemarker/2.3.18/freemarker-2.3.18-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_hamcrest_hamcrest_core_1_1.xml
+++ b/.idea/libraries/Maven__org_hamcrest_hamcrest_core_1_1.xml
+<component name="libraryTable">
+  <library name="Maven: org.hamcrest:hamcrest-core:1.1">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_javassist_javassist_3_16_1_GA.xml
+++ b/.idea/libraries/Maven__org_javassist_javassist_3_16_1_GA.xml
+<component name="libraryTable">
+  <library name="Maven: org.javassist:javassist:3.16.1-GA">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_mockito_mockito_all_1_9_5.xml
+++ b/.idea/libraries/Maven__org_mockito_mockito_all_1_9_5.xml
+<component name="libraryTable">
+  <library name="Maven: org.mockito:mockito-all:1.9.5">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/mockito/mockito-all/1.9.5/mockito-all-1.9.5.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/mockito/mockito-all/1.9.5/mockito-all-1.9.5-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/mockito/mockito-all/1.9.5/mockito-all-1.9.5-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_reflections_reflections_0_9_9_RC1.xml
+++ b/.idea/libraries/Maven__org_reflections_reflections_0_9_9_RC1.xml
+<component name="libraryTable">
+  <library name="Maven: org.reflections:reflections:0.9.9-RC1">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_modules_scala_parser_combinators_2_11_1_0_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_modules_scala_parser_combinators_2_11_1_0_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang.modules:scala-parser-combinators_2.11:1.0.2">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-parser-combinators_2.11/1.0.2/scala-parser-combinators_2.11-1.0.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-parser-combinators_2.11/1.0.2/scala-parser-combinators_2.11-1.0.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-parser-combinators_2.11/1.0.2/scala-parser-combinators_2.11-1.0.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_modules_scala_xml_2_11_1_0_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_modules_scala_xml_2_11_1_0_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang.modules:scala-xml_2.11:1.0.2">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-xml_2.11/1.0.2/scala-xml_2.11-1.0.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-xml_2.11/1.0.2/scala-xml_2.11-1.0.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-xml_2.11/1.0.2/scala-xml_2.11-1.0.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_scala_compiler_2_10_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_scala_compiler_2_10_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang:scala-compiler:2.10.2">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.10.2/scala-compiler-2.10.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.10.2/scala-compiler-2.10.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.10.2/scala-compiler-2.10.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_scala_library_2_11_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_scala_library_2_11_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang:scala-library:2.11.2" type="Scala">
+    <properties>
+      <compiler-classpath>
+        <root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.11.2/scala-compiler-2.11.2.jar" />
+        <root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar" />
+        <root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2.jar" />
+      </compiler-classpath>
+    </properties>
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_scala_reflect_2_10_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_scala_reflect_2_10_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang:scala-reflect:2.10.2">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.10.2/scala-reflect-2.10.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.10.2/scala-reflect-2.10.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.10.2/scala-reflect-2.10.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scala_lang_scala_reflect_2_11_2.xml
+++ b/.idea/libraries/Maven__org_scala_lang_scala_reflect_2_11_2.xml
+<component name="libraryTable">
+  <library name="Maven: org.scala-lang:scala-reflect:2.11.2">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scalatest_scalatest_2_11_2_2_1.xml
+++ b/.idea/libraries/Maven__org_scalatest_scalatest_2_11_2_2_1.xml
+<component name="libraryTable">
+  <library name="Maven: org.scalatest:scalatest_2.11:2.2.1">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalatest/scalatest_2.11/2.2.1/scalatest_2.11-2.2.1.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalatest/scalatest_2.11/2.2.1/scalatest_2.11-2.2.1-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalatest/scalatest_2.11/2.2.1/scalatest_2.11-2.2.1-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_scalaz_scalaz_core_2_11_7_1_0.xml
+++ b/.idea/libraries/Maven__org_scalaz_scalaz_core_2_11_7_1_0.xml
+<component name="libraryTable">
+  <library name="Maven: org.scalaz:scalaz-core_2.11:7.1.0">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalaz/scalaz-core_2.11/7.1.0/scalaz-core_2.11-7.1.0.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalaz/scalaz-core_2.11/7.1.0/scalaz-core_2.11-7.1.0-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/scalaz/scalaz-core_2.11/7.1.0/scalaz-core_2.11-7.1.0-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_simpleframework_simple_xml_2_0_4.xml
+++ b/.idea/libraries/Maven__org_simpleframework_simple_xml_2_0_4.xml
+<component name="libraryTable">
+  <library name="Maven: org.simpleframework:simple-xml:2.0.4">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/simpleframework/simple-xml/2.0.4/simple-xml-2.0.4.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/simpleframework/simple-xml/2.0.4/simple-xml-2.0.4-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/simpleframework/simple-xml/2.0.4/simple-xml-2.0.4-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file
--- a/.idea/libraries/Maven__org_slf4j_slf4j_api_1_6_1.xml
+++ b/.idea/libraries/Maven__org_slf4j_slf4j_api_1_6_1.xml
+<component name="libraryTable">
+  <library name="Maven: org.slf4j:slf4j-api:1.6.1">
+    <CLASSES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.6.1/slf4j-api-1.6.1.jar!/" />
+    </CLASSES>
+    <JAVADOC>
+      <root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.6.1/slf4j-api-1.6.1-javadoc.jar!/" />
+    </JAVADOC>
+    <SOURCES>
+      <root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.6.1/slf4j-api-1.6.1-sources.jar!/" />
+    </SOURCES>
+  </library>
+</component>
\ No newline at end of file