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biopet.biopet
Commits
59d477c5
Commit
59d477c5
authored
Jan 17, 2017
by
Peter van 't Hof
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Added delete dit step
parent
8ef9a575
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1 changed file
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6 additions
and
2 deletions
+6
-2
biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/PipelineStatusTest.scala
...t/scala/nl/lumc/sasc/biopet/core/PipelineStatusTest.scala
+6
-2
No files found.
biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/PipelineStatusTest.scala
View file @
59d477c5
...
...
@@ -8,6 +8,7 @@ import org.scalatest.testng.TestNGSuite
import
org.testng.annotations.Test
import
PipelineStatusTest.Status
import
nl.lumc.sasc.biopet.utils.IoUtils._
import
org.apache.commons.io.FileUtils
/**
* Created by pjvan_thof on 10-1-17.
...
...
@@ -16,21 +17,23 @@ class PipelineStatusTest extends TestNGSuite with Matchers {
@Test
def
testDefault
()
:
Unit
=
{
val
outputDir
=
Files
.
createTempDir
()
outputDir
.
deleteOnExit
()
PipelineStatusTest
.
writeDepsToDir
(
outputDir
)
PipelineStatus
.
main
(
Array
(
"-o"
,
outputDir
.
toString
,
"-d"
,
outputDir
.
toString
))
checkOutput
(
outputDir
)
FileUtils
.
deleteDirectory
(
outputDir
)
}
@Test
def
testDepsFileArg
()
:
Unit
=
{
val
outputDir
=
Files
.
createTempDir
()
outputDir
.
deleteOnExit
()
val
depsfile
=
PipelineStatusTest
.
writeDepsToDir
(
outputDir
)
PipelineStatus
.
main
(
Array
(
"-o"
,
outputDir
.
toString
,
"-d"
,
outputDir
.
toString
,
"--depsFile"
,
depsfile
.
toString
))
checkOutput
(
outputDir
)
FileUtils
.
deleteDirectory
(
outputDir
)
}
def
checkOutput
(
outputDir
:
File
,
...
...
@@ -83,6 +86,7 @@ class PipelineStatusTest extends TestNGSuite with Matchers {
@Test
def
testDeps
()
:
Unit
=
{
val
depsFile
=
File
.
createTempFile
(
"deps."
,
".json"
)
depsFile
.
deleteOnExit
()
PipelineStatusTest
.
writeDeps
(
depsFile
,
new
File
(
"/tmp"
))
val
deps
=
PipelineStatus
.
readDepsFile
(
depsFile
)
...
...
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