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biopet.biopet
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553ac18d
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553ac18d
authored
8 years ago
by
Sander Bollen
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@@ -19,7 +19,7 @@ If you decide to use Maven, you should clone the [GATK public github repository]
You should use GATK 3.6.
After cloning GATK 3.6, run the following in a terminal
`mvn clean
&& mvn
install`
`mvn clean install`
You should perform the same steps for
[
Biopet
](
https://github.com/biopet/biopet
)
. This document assumes you are working with Biopet 0.7 or higher.
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@@ -149,8 +149,6 @@ assemblyMergeStrategy in assembly := {
}
```
TODO
## New pipeline
To create a new pipeline in your project you need a class that extends from
`Qscript`
and
`SummaryQScript`
.
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