Merge branch 'fix-sample-names' into 'develop'
Fix sample names on VCFs used in by tool tests * Replaces identifiers (e.g. Child_something) with `Sample_101` etc. * Some proper temp file creation for more tools See merge request !259
No related branches found
No related tags found
Showing
- public/biopet-tools/src/test/resources/VEP_oneline.vcf 1 addition, 7 deletionspublic/biopet-tools/src/test/resources/VEP_oneline.vcf
- public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/VEP_oneline.vcf.gz
- public/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi 0 additions, 0 deletions...ic/biopet-tools/src/test/resources/VEP_oneline.vcf.gz.tbi
- public/biopet-tools/src/test/resources/chrQ.vcf 1 addition, 7 deletionspublic/biopet-tools/src/test/resources/chrQ.vcf
- public/biopet-tools/src/test/resources/chrQ.vcf.gz 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/chrQ.vcf.gz
- public/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/chrQ.vcf.gz.tbi
- public/biopet-tools/src/test/resources/chrQ2.vcf 1 addition, 7 deletionspublic/biopet-tools/src/test/resources/chrQ2.vcf
- public/biopet-tools/src/test/resources/chrQ2.vcf.gz 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/chrQ2.vcf.gz
- public/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/chrQ2.vcf.gz.tbi
- public/biopet-tools/src/test/resources/unvep_online.vcf.gz 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/unvep_online.vcf.gz
- public/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi 0 additions, 0 deletions...c/biopet-tools/src/test/resources/unvep_online.vcf.gz.tbi
- public/biopet-tools/src/test/resources/unvepped.vcf 1 addition, 7 deletionspublic/biopet-tools/src/test/resources/unvepped.vcf
- public/biopet-tools/src/test/resources/unvepped.vcf.gz 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/unvepped.vcf.gz
- public/biopet-tools/src/test/resources/unvepped.vcf.gz.tbi 0 additions, 0 deletionspublic/biopet-tools/src/test/resources/unvepped.vcf.gz.tbi
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFastaTest.scala 9 additions, 9 deletions...la/nl/lumc/sasc/biopet/tools/BastyGenerateFastaTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBamTest.scala 9 additions, 3 deletions.../nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBamTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/MergeAllelesTest.scala 10 additions, 3 deletions...st/scala/nl/lumc/sasc/biopet/tools/MergeAllelesTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfFilterTest.scala 36 additions, 30 deletions.../test/scala/nl/lumc/sasc/biopet/tools/VcfFilterTest.scala
- public/biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/VcfToTsvTest.scala 10 additions, 3 deletions...c/test/scala/nl/lumc/sasc/biopet/tools/VcfToTsvTest.scala
Loading
Please register or sign in to comment