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Commit 4c2905e2 authored by Sander Bollen's avatar Sander Bollen
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fix cnMops.R

parent e1d52a35
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......@@ -31,7 +31,7 @@ CNRoutput <- opt$cnr
windowLength <- opt$wl
bamFile <- args
BAMFiles <- strsplit(c(bamFile), " ")[[1]]
BAMFiles <- bamFile
bamDataRanges <- tryCatch(
{
getReadCountsFromBAM(BAMFiles, mode="paired", refSeqName=chromosome, WL=windowLength, parallel=opt$threads)
......
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