Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
4c2905e2
Commit
4c2905e2
authored
Jan 09, 2017
by
Sander Bollen
Browse files
fix cnMops.R
parent
e1d52a35
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/cnmops.R
View file @
4c2905e2
...
...
@@ -31,7 +31,7 @@ CNRoutput <- opt$cnr
windowLength
<-
opt
$
wl
bamFile
<-
args
BAMFiles
<-
strsplit
(
c
(
bamFile
),
" "
)[[
1
]]
BAMFiles
<-
bamFile
bamDataRanges
<-
tryCatch
(
{
getReadCountsFromBAM
(
BAMFiles
,
mode
=
"paired"
,
refSeqName
=
chromosome
,
WL
=
windowLength
,
parallel
=
opt
$
threads
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment