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biopet.biopet
Commits
4a368a8b
Commit
4a368a8b
authored
Jun 24, 2015
by
Peter van 't Hof
Browse files
switch java requirment to general reportbuilder
parent
9d3cfc61
Changes
2
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/report/ReportBuilder.scala
View file @
4a368a8b
...
...
@@ -25,6 +25,8 @@ trait ReportBuilderExtension extends ToolCommandFuntion {
/** Arguments that are passed on the commandline */
var
args
:
Map
[
String
,
String
]
=
Map
()
override
val
defaultCoreMemory
=
3.0
override
def
beforeGraph
:
Unit
=
{
super
.
beforeGraph
jobOutputFile
=
new
File
(
outputDir
,
".report.log.out"
)
...
...
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
4a368a8b
...
...
@@ -14,8 +14,6 @@ import nl.lumc.sasc.biopet.pipelines.flexiprep.FlexiprepReport
*/
class
ShivaReport
(
val
root
:
Configurable
)
extends
ReportBuilderExtension
{
val
builder
=
ShivaReport
override
val
defaultCoreMemory
=
3.0
}
/** Object for report generation for Shiva pipeline */
...
...
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