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46a8a9fa

Commit 46a8a9fa authored 8 years ago by Wai Yi Leung

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Merge branch 'develop' into fix-svcallers-vcf

parents ff6840c5 0232ff00

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Changes 8

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public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala 9 additions, 1 deletion

...n/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala 274 additions, 6 deletions

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStats.scala 3 additions, 2 deletions

...scala/nl/lumc/sasc/biopet/extensions/tools/VcfStats.scala
public/biopet-tools-extensions/src/test/scala/nl/lumc/sasc/biopet/extensions/tools/VcfFilterTest.scala 2 additions, 1 deletion

.../nl/lumc/sasc/biopet/extensions/tools/VcfFilterTest.scala
public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala 1 addition, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/tools/VcfWithVcf.scala
public/biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/config/Config.scala 4 additions, 4 deletions

.../main/scala/nl/lumc/sasc/biopet/utils/config/Config.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeClosed.scala 1 addition, 1 deletion

...l/lumc/sasc/biopet/pipelines/gears/GearsQiimeClosed.scala
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 10 additions, 5 deletions

...scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala

with 304 additions and 21 deletions

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