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biopet.biopet
Commits
41dae8c5
Commit
41dae8c5
authored
Mar 14, 2016
by
Peter van 't Hof
Browse files
Raise default memory for VEP
parent
793751c9
Changes
1
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
View file @
41dae8c5
...
...
@@ -148,6 +148,8 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
// ought to be a flag, but is BUG in VEP; becomes numeric ("1" is true)
var
failed
:
Option
[
Int
]
=
config
(
"failed"
)
override
def
defaultCoreMemory
=
4.0
override
def
beforeGraph
()
:
Unit
=
{
super
.
beforeGraph
()
if
(!
cache
&&
!
database
)
{
...
...
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