Format fixes

biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/MultiSampleQScriptTest.scala

@@ -18,9 +18,9 @@ import java.io.File
 
 import nl.lumc.sasc.biopet.core.MultiSampleQScript.Gender
 import nl.lumc.sasc.biopet.core.extensions.Md5sum
-import nl.lumc.sasc.biopet.utils.{ConfigUtils, Logging}
+import nl.lumc.sasc.biopet.utils.{ ConfigUtils, Logging }
 import nl.lumc.sasc.biopet.utils.config.Config
-import org.broadinstitute.gatk.queue.{QScript, QSettings}
+import org.broadinstitute.gatk.queue.{ QScript, QSettings }
 import org.scalatest.Matchers
 import org.scalatest.testng.TestNGSuite
 import org.testng.annotations.Test

biopet-core/src/test/scala/nl/lumc/sasc/biopet/core/PipelineStatusTest.scala

 package nl.lumc.sasc.biopet.core
 
-import java.io.{File, PrintWriter}
+import java.io.{ File, PrintWriter }
 
 import com.google.common.io.Files
 import org.scalatest.Matchers
@@ -11,8 +11,8 @@ import nl.lumc.sasc.biopet.utils.IoUtils._
 import org.apache.commons.io.FileUtils
 
 /**
-  * Created by pjvan_thof on 10-1-17.
-  */
+ * Created by pjvan_thof on 10-1-17.
+ */
 class PipelineStatusTest extends TestNGSuite with Matchers {
   @Test
   def testDefault(): Unit = {

biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/vcfstats/VcfStats.scala

@@ -14,22 +14,22 @@
  */
 package nl.lumc.sasc.biopet.tools.vcfstats
 
-import java.io.{File, FileOutputStream, IOException, PrintWriter}
+import java.io.{ File, FileOutputStream, IOException, PrintWriter }
 
 import htsjdk.samtools.util.Interval
-import htsjdk.variant.variantcontext.{Genotype, VariantContext}
+import htsjdk.variant.variantcontext.{ Genotype, VariantContext }
 import htsjdk.variant.vcf.VCFFileReader
 import nl.lumc.sasc.biopet.utils.intervals.BedRecordList
-import nl.lumc.sasc.biopet.utils.{ConfigUtils, FastaUtils, ToolCommand, VcfUtils}
+import nl.lumc.sasc.biopet.utils.{ ConfigUtils, FastaUtils, ToolCommand, VcfUtils }
 
 import scala.collection.JavaConversions._
 import scala.collection.mutable
 import scala.io.Source
-import scala.sys.process.{Process, ProcessLogger}
+import scala.sys.process.{ Process, ProcessLogger }
 import scala.util.Random
 import scala.concurrent.ExecutionContext.Implicits.global
 import scala.concurrent.duration._
-import scala.concurrent.{Await, Future}
+import scala.concurrent.{ Await, Future }
 
 /**
  * This tool will generate statistics from a vcf file