Commit 3f119436 authored by Peter van 't Hof's avatar Peter van 't Hof

Format fixes

parent e279c724
......@@ -18,9 +18,9 @@ import java.io.File
import nl.lumc.sasc.biopet.core.MultiSampleQScript.Gender
import nl.lumc.sasc.biopet.core.extensions.Md5sum
import nl.lumc.sasc.biopet.utils.{ConfigUtils, Logging}
import nl.lumc.sasc.biopet.utils.{ ConfigUtils, Logging }
import nl.lumc.sasc.biopet.utils.config.Config
import org.broadinstitute.gatk.queue.{QScript, QSettings}
import org.broadinstitute.gatk.queue.{ QScript, QSettings }
import org.scalatest.Matchers
import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
......
package nl.lumc.sasc.biopet.core
import java.io.{File, PrintWriter}
import java.io.{ File, PrintWriter }
import com.google.common.io.Files
import org.scalatest.Matchers
......@@ -11,8 +11,8 @@ import nl.lumc.sasc.biopet.utils.IoUtils._
import org.apache.commons.io.FileUtils
/**
* Created by pjvan_thof on 10-1-17.
*/
* Created by pjvan_thof on 10-1-17.
*/
class PipelineStatusTest extends TestNGSuite with Matchers {
@Test
def testDefault(): Unit = {
......
......@@ -14,22 +14,22 @@
*/
package nl.lumc.sasc.biopet.tools.vcfstats
import java.io.{File, FileOutputStream, IOException, PrintWriter}
import java.io.{ File, FileOutputStream, IOException, PrintWriter }
import htsjdk.samtools.util.Interval
import htsjdk.variant.variantcontext.{Genotype, VariantContext}
import htsjdk.variant.variantcontext.{ Genotype, VariantContext }
import htsjdk.variant.vcf.VCFFileReader
import nl.lumc.sasc.biopet.utils.intervals.BedRecordList
import nl.lumc.sasc.biopet.utils.{ConfigUtils, FastaUtils, ToolCommand, VcfUtils}
import nl.lumc.sasc.biopet.utils.{ ConfigUtils, FastaUtils, ToolCommand, VcfUtils }
import scala.collection.JavaConversions._
import scala.collection.mutable
import scala.io.Source
import scala.sys.process.{Process, ProcessLogger}
import scala.sys.process.{ Process, ProcessLogger }
import scala.util.Random
import scala.concurrent.ExecutionContext.Implicits.global
import scala.concurrent.duration._
import scala.concurrent.{Await, Future}
import scala.concurrent.{ Await, Future }
/**
* This tool will generate statistics from a vcf file
......
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