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biopet.biopet
Commits
3ed93bee
Commit
3ed93bee
authored
Mar 08, 2015
by
bow
Browse files
Update GSNAP defaults for cluster run
parent
c56d1178
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Gsnap.scala
View file @
3ed93bee
...
...
@@ -22,6 +22,12 @@ class Gsnap(val root: Configurable) extends BiopetCommandLineFunction {
/** default executable */
executable
=
config
(
"exe"
,
default
=
"gsnap"
,
freeVar
=
false
)
/** default threads */
override
def
defaultThreads
=
nthreads
.
getOrElse
(
1
)
/** default vmem for cluster jobs */
override
def
defaultVmem
=
"4G"
/** input file */
@Input
(
doc
=
"Input FASTQ file(s)"
,
required
=
true
)
//var input: List[File] = _
var
input
:
List
[
File
]
=
List
.
empty
[
File
]
...
...
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