Commit 3ed93bee authored by bow's avatar bow
Browse files

Update GSNAP defaults for cluster run

parent c56d1178
......@@ -22,6 +22,12 @@ class Gsnap(val root: Configurable) extends BiopetCommandLineFunction {
/** default executable */
executable = config("exe", default = "gsnap", freeVar = false)
/** default threads */
override def defaultThreads = nthreads.getOrElse(1)
/** default vmem for cluster jobs */
override def defaultVmem = "4G"
/** input file */
@Input(doc = "Input FASTQ file(s)", required = true) //var input: List[File] = _
var input: List[File] = List.empty[File]
......
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