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biopet.biopet
Commits
3e956c9c
Commit
3e956c9c
authored
Mar 07, 2015
by
bow
Browse files
Use correct sickle value retrieval
parent
41883883
Changes
1
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public/gentrap/src/main/resources/nl/lumc/sasc/biopet/pipelines/gentrap/templates/pdf/lib_seqeval.tex
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3e956c9c
...
...
@@ -143,9 +143,10 @@ Table~\ref{tab:clipsync}.
Parameter
&
Count
\\
\hline
\hline
Discarded FASTQ records from read 1
&
((( lib.flexiprep.stats.trimming.num
_
reads
_
discarded
_
R1|nice
_
int )))
\\
Discarded FASTQ records from read 2
&
((( lib.flexiprep.stats.trimming.num
_
reads
_
discarded
_
R2|nice
_
int )))
\\
Discarded FASTQ records from both reads
&
((( lib.flexiprep.stats.trimming.num
_
paired
_
reads
_
discarded|nice
_
int )))
\\
\hline
Total kept FASTQ read pairs
&
((( lib.flexiprep.stats.trimming.num
_
paired
_
reads
_
kept|nice
_
int )))
\\
Discarded FASTQ records from both reads
&
((( lib.flexiprep.stats.trimming.num
_
reads
_
discarded
_
both|nice
_
int )))
\\
\hline
Total kept FASTQ reads
&
((( lib.flexiprep.stats.trimming.num
_
reads
_
kept|nice
_
int )))
\\
\hline
\end{tabular}
\end{center}
...
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