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biopet.biopet
Commits
3e58bd92
Commit
3e58bd92
authored
Aug 27, 2015
by
Peter van 't Hof
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Code style fix
parent
bb5776d8
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
...k/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
+1
-2
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
View file @
3e58bd92
...
...
@@ -303,10 +303,9 @@ object VcfStats extends ToolCommand {
line
.
getID
}).
toList
:::
defaultGenotypeFields
val
bedRecords
=
(
cmdArgs
.
intervals
match
{
case
Some
(
intervals
)
=>
BedRecordList
.
fromFile
(
intervals
).
validateContigs
(
cmdArgs
.
referenceFile
)
case
_
=>
BedRecordList
.
fromReference
(
cmdArgs
.
referenceFile
)
case
_
=>
BedRecordList
.
fromReference
(
cmdArgs
.
referenceFile
)
}).
combineOverlap
.
scatter
(
cmdArgs
.
binSize
)
val
intervals
:
List
[
Interval
]
=
bedRecords
.
toSamIntervals
.
toList
...
...
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