Commit 3e3cbed9 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changed name

parent 53782d96
......@@ -45,7 +45,7 @@ class VepNormalizer(val root: Configurable) extends ToolCommandFuntion {
var inputVCF: File = null
@Output(doc = "Output VCF", shortName = "OutputFile", required = true)
var outputVCF: File = null
var outputVcf: File = null
var mode: String = config("mode", default = "explode")
var doNotRemove: Boolean = config("donotremove", default = false)
......@@ -54,7 +54,7 @@ class VepNormalizer(val root: Configurable) extends ToolCommandFuntion {
override def commandLine = super.commandLine +
required("-I", inputVCF) +
required("-O", outputVCF) +
required("-O", outputVcf) +
required("-m", mode) +
conditional(doNotRemove, "--do-not-remove")
}
......
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