Commit 3befe631 authored by bow's avatar bow
Browse files

Merge branch 'feature-fix_raxml' into 'develop'

Feature fix raxml

Small fix for basty pipeline

See merge request !87
parents c78ca1be 0999885a
......@@ -50,6 +50,8 @@ class Raxml(val root: Configurable) extends BiopetCommandLineFunction {
@Argument(doc = "Output directory", required = true)
var w: String = _
var noBfgs: Boolean = config("no_bfgs", default = false)
@Input(required = false)
var t: File = _
......@@ -101,5 +103,6 @@ class Raxml(val root: Configurable) extends BiopetCommandLineFunction {
optional("-f", f) +
optional("-t", t) +
optional("-z", z) +
conditional(noBfgs, "--no-bgfs") +
required("-T", threads)
}
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