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biopet.biopet
Commits
385aa64d
Commit
385aa64d
authored
May 04, 2016
by
Sander Bollen
Browse files
autostyle changes
parent
fcc7d9bf
Changes
2
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/HaplotypeCallerGvcf.scala
View file @
385aa64d
...
...
@@ -14,8 +14,8 @@ class HaplotypeCallerGvcf(val root: Configurable) extends Variantcaller {
protected
def
defaultPrio
=
5
/**
*
*/
*
Map of sample name -> gvcf. May be empty.
*/
protected
var
gVcfFiles
:
Map
[
String
,
File
]
=
Map
()
def
getGvcfs
=
gVcfFiles
...
...
shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Variantcaller.scala
View file @
385aa64d
...
...
@@ -29,8 +29,8 @@ trait Variantcaller extends QScript with BiopetQScript with Reference {
var
namePrefix
:
String
=
_
/**
* Map of samplename -> (preprocessed) bam file
*/
* Map of samplename -> (preprocessed) bam file
*/
var
inputBams
:
Map
[
String
,
File
]
=
_
def
init
()
=
{}
...
...
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