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biopet.biopet
Commits
315f5230
Commit
315f5230
authored
May 17, 2016
by
Peter van 't Hof
Browse files
Added gtf to star index generation
parent
53cc5101
Changes
1
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Inline
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generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexes.scala
View file @
315f5230
...
...
@@ -238,6 +238,7 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
starIndex
.
outputDir
=
starDir
starIndex
.
reference
=
createLinks
(
starDir
)
starIndex
.
runmode
=
"genomeGenerate"
starIndex
.
sjdbGTFfile
=
gtfFile
add
(
starIndex
)
configDeps
:+=
starIndex
.
jobOutputFile
outputConfig
+=
"star"
->
Map
(
...
...
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